Model Repository
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This table lists all the models that have been officially released with CellOrganizer.
File name
Size
Version
Dim
Cell
Framework
Framework type
Pattern(s)
Pattern class
Pattern type
cell_model_nuc_align.mat
724Mb
2.4.0
3D
H1299
Cell
diffeomorphic
N/A
N/A
N/A
endosome.mat
32Kb
2.1.0
2D
HeLa
Cell and nucleus
medial axis and ratio models
endosomes
vesicles
GMM
lysosome.mat
32Kb
2.1.0
2D
HeLa
Cell and nucleus
medial axis and ratio models
lysosomes
vesicles
GMM
mitochondrion.mat
32Kb
2.1.0
2D
HeLa
Cell and nucleus
medial axis and ratio models
mitochondria
vesicles
GMM
nucleolus.mat
32Kb
2.1.0
2D
HeLa
Cell and nucleus
medial axis and ratio models
nucleoli
vesicles
GMM
3t3_model.mat
992Kb
2.1.0
3D
3T3
Cell and nucleus
diffeomorphic
lysosomes
vesicles
GMM
centro.mat
2.0Mb
2.1.0
3D
HeLa
Cell and nucleus
cylindrical and ratio
centrosomes
vesicles
GMM
hela_model.mat
5.4Mb
2.1.0
3D
HeLa
Cell and nucleus
cylindrical and ratio
lysosomes
vesicles
GMM
lamp2.mat
2.0Mb
2.1.0
3D
HeLa
Cell and nucleus
cylindrical and ratio
lysosomes
vesicles
GMM
mit.mat
2.0Mb
2.1.0
3D
HeLa
Cell and nucleus
cylindrical and ratio
mitochondria
vesicles
GMM
nuc.mat
2.0Mb
2.1.0
3D
HeLa
Cell and nucleus
cylindrical and ratio
nucleoli
vesicles
GMM
tfr.mat
2.0Mb
2.1.0
3D
HeLa
Cell and nucleus
cylindrical and ratio
endosomes
vesicles
GMM
tub.mat
2.0Mb
2.1.0
3D
HeLa
Cell and nucleus
cylindrical and ratio
microtubules
vesicles
GMM
hela_nuc_10_15_15.mat
71Mb
2.4.0
3D
HeLa
Nucleus
diffeomorphic
N/A
N/A
N/A
hela_cell_10_15_15.mat
75Mb
2.4.0
3D
HeLa
Cell
diffeomorphic
N/A
N/A
N/A
helamodel_9_16_15.mat
72Mb
2.4.0
3D
HeLa
Cell and nucleus
diffeomorphic
N/A
N/A
N/A
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Home
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Helper Utilities
CellOrganizer for Matlab
Version 2.8.1
Version 2.8.0
Version 2.7.2
Version 2.7.1
Version 2.7.0
Version 2.6.0
Version 2.5.2
Version 2.5.1
Version 2.5.0
Versions 2.0-2.4
Version 1.9
Version 1.8
Version 1.7
Version 1.6
CellOrganizer for Docker
CellOrganizer for Galaxy
CellOrganizer for Singularity
Trained Models Repository
Documentation
What can I do with CellOrganizer?
CellOrganizer for Matlab
CellOrganizer for Docker
CellOrganizer for Galaxy
Online Services
CellOrganizer for Galaxy
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